MIAPA
This serves as a web home and central hub for resources related to developing and deploying a Minimal Information for a Phylogenetic Analysis (MIAPA) standard.
Links
Active projects
- Elliott Hauser's 2012 Google Summer of Code project "NeXML to MIAPA mapping"
- Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard workshop at TDWG 2011
- MIAPA Draft RFC
- plan for a PhyloRelevantLiteratureSurvey
- Conference Plan 2011
- Tree Best Practices, article in progress for BMC, based largely on TDWG report
- MIAPA Survey on barriers to re-use of phylogenies and associated data and metadata
- Reuse Cases
- Barriers to reuse -- from user stories collected by the survey team
- Reuse Barriers -- Hilmar's list regarding TreeBASE submissions
- MIAPA Demonstration Project in the Leebens-Mack lab, spring 2011
- The PhyloWays list of reference workflow annotations (papers with extracted workflow information)
Resources
- There is an email list for discussion of MIAPA. Please consider joining if you would like to play an active role in developing and supporting a minimal-information checklist for phylogenetic studies.
- MIAPA white paper at NESCent
- Arlin's proof-of-concept and an idea for a knowledge-capture experiment
- Leebens-Mack et al (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS: a Journal of Integrative Biology 10 (2): 231-7. doi:10.1089/omi.2006.10.231.