MIAPA: Difference between revisions
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* [http://mibbi.sourceforge.net/projects/MIAPA.shtml MIAPA at MIBBI] | * [http://mibbi.sourceforge.net/projects/MIAPA.shtml MIAPA at MIBBI] | ||
* [[CommentsOnOpenAnnotationDataModel]] | * [[CommentsOnOpenAnnotationDataModel]] | ||
* [https:// | * [https://evoinfo.nescent.org/MIAPA_WhitePaper MIAPA white paper] at NESCent | ||
* Arlin's [https:// | * Arlin's [https://evoinfo.nescent.org/Supporting_MIAPA proof-of-concept and an idea for a knowledge-capture experiment] | ||
* Leebens-Mack et al (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS: a Journal of Integrative Biology 10 (2): 231-7. [http://dx.doi.org/10.1089/omi.2006.10.231 doi:10.1089/omi.2006.10.231]. | * Leebens-Mack et al (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS: a Journal of Integrative Biology 10 (2): 231-7. [http://dx.doi.org/10.1089/omi.2006.10.231 doi:10.1089/omi.2006.10.231]. | ||
[[Category:MIAPA]] | [[Category:MIAPA]] | ||
Latest revision as of 22:14, 1 June 2018
This serves as a web home and central hub for resources related to developing and deploying a Minimal Information for a Phylogenetic Analysis (MIAPA) standard.
Current versions
The most current versions of MIAPA artifacts such as checklist, ontologies, and tools are maintained on Github: https://github.com/evoinfo/miapa
Links
Active projects
- Karen Cranston and Elliot Hauser surveyed the community about the the MIAPA checklist terms
- link to survey
- resulting manuscript is in preparation on GitHub
- Elliott Hauser's 2012 Google Summer of Code project "NeXML to MIAPA mapping"
- Emily McTavish's Tree Annotation Vocabulary as resulting from the Phylotastic I hackathon. Includes a mapping to MIAPA draft checklist attributes.
- Steps towards a Minimum Information About a Phylogenetic Analysis (MIAPA) Standard workshop at TDWG 2011
- This workshop produced a checklist of metadata elements for a proposed community survey.
- MIAPA Draft RFC
- Plan for a PhyloRelevantLiteratureSurvey
- Conference Plan 2011
- Tree Best Practices, article in progress for BMC, based largely on TDWG report
- MIAPA Survey on barriers to re-use of phylogenies and associated data and metadata
- Reuse Cases
- Barriers to reuse -- from user stories collected by the survey team
- Reuse Barriers -- Hilmar's list regarding TreeBASE submissions
- MIAPA Demonstration Project in the Leebens-Mack lab, spring 2011
- The PhyloWays list of reference workflow annotations (papers with extracted workflow information)
Resources
- There is an email list for discussion of MIAPA. Please consider joining if you would like to play an active role in developing and supporting a minimal-information checklist for phylogenetic studies.
- MIAPA at MIBBI
- CommentsOnOpenAnnotationDataModel
- MIAPA white paper at NESCent
- Arlin's proof-of-concept and an idea for a knowledge-capture experiment
- Leebens-Mack et al (2006) Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS: a Journal of Integrative Biology 10 (2): 231-7. doi:10.1089/omi.2006.10.231.